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Ben Dichter

Username    bendichter
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52 projects

roiextractors

Last released

Python module for extracting optical physiology ROIs and traces for various file types and formats

neuroconv

Last released

Convert data from proprietary formats to NWB format.

ndx-pose

Last released

NWB extension to store pose estimation data

brokenaxes

Last released

Create broken axes

dandi-s3-log-parser

Last released

Parse S3 logs to more easily calculate usage metrics per asset.

pynwb

Last released

Package for working with Neurodata stored in the NWB format.

nwbinspector

Last released

Tool to inspect NWB files for best practices compliance.

vame-py

Last released

Variational Animal Motion Embedding.

ndx-photometry

Last released

extension for fiber photometry data

code-crafter

Last released

Edit Python code with ease.

ndx-turner-metadata

Last released

The NWB extension for storing Turner lab specific metadata

ndx-pinto-metadata

Last released

The NWB extension for storing ViRMEN experimental metadata for the Pinto lab.

nwbwidgets

Last released

This is nwbwidgets, widgets for viewing the contents of a NWB-file in Jupyter Notebooks using ipywidgets.

ndx-miniscope

Last released

Represent metadata for Miniscope acquisition system.

fparse

Last released

parse() is the opposite of format()

ndx-ibl

Last released

IBL sessions specific metadata

ahrens-lab-to-nwb

Last released

NWB conversion scripts, functions, and classes for an the Ahrens lab.

ndx-hierarchical-behavioral-data

Last released

NWB extensions for storing hierarchical behavioral data

murthy-lab-to-nwb

Last released

NWB conversion scripts, functions, and classes for the nwb conversion of Murthy lab

ndx-extract

Last released

NWB extension for storage of parameters and output of EXTRACT pipeline.

ndx-sound

Last released

Represent acoustic stimuli and responses

nwb-conversion-tools

Last released

Convert data from proprietary formats to NWB format.

heidelberg-metadata-gui

Last released

Web graphical user interface for Metadata handling

jaeger-lab-to-nwb

Last released

NWB conversion scripts and tutorials.

nwb-web-gui

Last released

Web graphical user interface for NWB conversion and exploring

json-schema-to-dash-forms

Last released

JSON schema to Dash forms

ndx-dandi-icephys

Last released

DandiIcephysMetadata extension.

movshon-lab-to-nwb

Last released

NWB conversion scripts and tutorials.

tank-lab-to-nwb

Last released

NWB conversion scripts and tutorials.

ndx-tank-metadata

Last released

NWB:N extension for storing metadata for Tank lab

ndx-fret

Last released

FRET

ndx-events

Last released

NWB extension for storing timestamped event and TTL pulse data

ecogvis

Last released

Timeseries visualizer for Electrocorticography (ECoG) signals stored in NWB files.

ndx-survey-data

Last released

NWB extension for survey/ behavioral data

ndx-bipolar-scheme

Last released

An NWB extension for storing bipolar scheme

ndx-spectrum

Last released

data type for holding power or phase spectra for a signal

ndx-labmetadata-abf

Last released

LabMetaData extension.

lazy-ops

Last released

Lazy slicing and transpose operations for h5py and zarr

ndx-icephys-meta

Last released

Implement proposal for hierarchical metadata strucutre for intracellular electrophysiology data

tolias-lab-to-nwb

Last released

tool to convert Tolias Lab matlab intracellular electrophysiology data into NWB:N format

ndx-labmetadata-giocomo

Last released

LabMetaData.

ndx-point-cloud-table

Last released

An extension for storing point clouds in an NWB file

axel-lab-to-nwb

Last released

NWB conversion scripts and tutorials.

buffalo-lab-data-to-nwb

Last released

A package for converting Buffalo Lab data to the NWB standard

ndx-bipolar-referencing

Last released

An NWB:N extension for storing bipolar referencing schema

ndx-simulation-output

Last released

Holds structures for recording data from multiple compartments of multiple neurons in a single TimeSeries

ndx-ecog

Last released

An NWB extension for storing the cortical surface of subjects in ECoG experiments

ndx-grayscalevolume

Last released

3D grayscale image.

ndx-speech

Last released

transcriptions and other speech-related data

nwb-docutils

Last released

Collection of CLIs, scripts and modules useful to generate the NWB documentation

nwbext-ecog

Last released

Convert data to nwb

nwbext-simulation-output

Last released

Extension for storing large-scale simulation output in the Neurodata Without Borders: Neurophysiology format

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