12 projects
gilda
Grounding for biomedical entities with contextual disambiguation
indra
Integrated Network and Dynamical Reasoning Assembler
famplex
Resources for grounding protein complexes and families from text and describing their hierarchical relationships.
pybiopax
A Python implementation of the BioPAX object model, and parts of PaxTools.
adeft
Acromine based Disambiguation of Entities From Text
protmapper
Map protein sites to human reference sequence.
biomappings
Curated and predicted mappings between biomedical identifiers in different namespaces
emmaa
Ecosystem of Machine-maintained Models with Automated Analysis
pykqml
KQML messaging classes in Python.
kappy
Wrapper to interact with the Kappa tool suite
s3edit
Edit files from S3 directly with your default editor.
jnius_indra
Python library to access Java classes