15 projects
scirpy
Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis
dso-core
Data Science Operations on top of dvc
pytometry
Flow & mass cytometry analytics in scverse
pertpy
Perturbation Analysis in the scverse ecosystem.
ehrapy
Electronic Health Record Analysis with Python.
infercnvpy
Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable.
pygenesig
Create and Validate Gene Signatures
nxfvars
Access nextflow variables from Python
nbimporter
Import IPython notebooks as modules
geos
Map server to view, measure and print maps in a web browserand to display maps as an overlay in google earth.
test-ciautobump
One line jokes for programmers (jokes as a service)
reportsrender
Execute and render notebooks as HTML reports.
chunksub
Submit jobs in chunks on a qsub-based cluster. *Like `parallel` only for qsub*
microbio
A minimalist Bioinformatics framework
nbwrapper
Execute ipython notebooks programmatically with parameters
