28 projects
wags-tails
Data acquisition tools for Wagnerds
dgipy
Python wrapper for accessing an instance of DGIdb v5 database
bioutils
miscellaneous simple bioinformatics utilities and lookup tables
ga4gh.vrs
GA4GH Variation Representation Specification (VRS) reference implementation
cool-seq-tool
Common Operation on Lots of Sequences Tool
regbot
Fetch regulatory approval data for drug terms
civicpy
CIViC variant knowledgebase analysis toolkit.
fusor
Computable object representation and validation for gene fusions
biocommons.example
Example Package
variation-normalizer
VICC normalization routine for variations
gene-normalizer
VICC normalization routines for genes
dcd-mapping
Map MaveDB scoresets to VRS objects
thera-py
VICC normalization routines for therapeutics
disease-normalizer
VICC normalization routines for diseases
agct
Another Genome Conversion Tool: Python frontend to Rust chainfile crate
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
uta-align
C-based sequence alignment for Python
biocommons.seqrepo
Non-redundant, compressed, journalled, file-based storage for biological sequences
evidence-normalizer
VICC normalization routine for evidence
seqrepo-rest-service
SeqRepo REST Service
ga4gh.vrsatile.pydantic
"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
hgvs-dataproviders-rest
hgvs dataproviders based on UTA and SeqRepo REST Interfaces
hgvs
HGVS Parser, Formatter, Mapper, Validator
uta-tools
Service for querying the biocommons.uta database
py-gene-fusions
Package for structuring gene fusions
variant-normalizer
VICC normalization routine for variants
eutils
"Python interface to NCBI's eutilities API"
uta
Universal Transcript Archive
