52 projects
lamin_utils
Lamin Utils.
ourprojects
Manage projects & teams.
omop
OMOP Common Data Model [`source <https://github.com/laminlabs/omop/blob/main/omop/models.py>`__].
clinicore
Basic clinical entities [`source <https://github.com/laminlabs/clinicore/blob/main/clinicore/models.py>`__].
findrefs
A reference manager [`source <https://github.com/laminlabs/findrefs/blob/main/findrefs/models.py>`__].
wetlab
Basic wetlab entities [`source <https://github.com/laminlabs/wetlab/blob/main/wetlab/models.py>`__].
lamindb
A data framework for biology.
lamin_cli
Lamin CLI.
lamindb_setup
Setup & configure LaminDB.
bionty
Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].
lnschema_core
LaminDB's core registries.
cellxgene_lamin
Manage cellxgene metadata using LaminDB.
readfcs
Parse fcs files into AnnData.
nbproject
nbproject: Manage Jupyter notebooks.
cellregistry
A reference manager.
laminci
Internal CI tools.
lnschema_bionty
Registries for basic biological entities, coupled to public ontologies.
bionty-base
Bionty.
cellxgene_lamin_validator
Lamin validator for CELLxGENE schema.
lamin_validator
Validators built on LaminDB.
lnschema_lamin1
Lamin's `lamin1` exemplary lab schema.
nbproject_test
Testing for nbproject.
lamin_vault
Lamin vault.
erdiagram
Make diagrams for SQLAlchemy.
lamin_logger
Logging setup.
lndb_storage
Storage → object.
lndb
LaminDB setup.
lnbase_biolab
Base classes for a lab schema in biology (`vvhc`).
lnschema_wetlab
Base classes for a wetlab schema (`vvhc`).
bioentity
bioentity.
lamin
LaminDB setup.
lndb_setup
LaminDB setup.
indb_schema_biology
Default schema module biology.
lnbfx
Manage bioinformatics pipelines.
lndb_hub
Connect to the hub from LaminDB.
bioreadout
Bio file readers, instrument schema.
lndocs
Lamin site generator.
lnschema_drylab
Schema module drylab (`xqfj`).
lndb_bfx_pipeline
Integrate LaminDB ingestion with bBFX pipelines.
lndb_schema_core
Schema module core (`yvzi`).
lndb_schema_bionty
Biological entities schema module.
lndb_schema_wetlab
Wetlab schema module.
lamindb_schema
Schema modules.
bioreader
Bio file readers, instrument schema.
lndb_cli
LaminDB command line tool.
exportpy
Serialize Python classes as Python code.
chemy
Manage chemical entities.
nbmeta
Manage Jupyter notebooks.
biogram
Make diagrams for biological entities.
biomap
biomap: mapping and standardizing biological entities..
scidata
scidata.
laminlake
Lamin Lake.
