51 projects
microsim
Light microscopy simulation in python
cmap
Scientific colormaps for python, without dependencies
pymmcore-plus
pymmcore superset providing improved APIs, event handling, and a pure python acquisition engine
useq-schema
Schema for multi-dimensional microscopy experiments
pymmcore-widgets
A set of Qt-based widgets onto the pymmcore-plus model
napari-micromanager
Micro-Manager GUI interface in napari.
ome-types
Python dataclasses for the OME data model
app-model
Generic application schema implemented in python
griffe-fieldz
Griffe extension adding support for data-class like things (pydantic, attrs, etc...)
fieldz
Utilities for providing compatibility with many dataclass-like libraries
pycudadecon
Python wrapper for CUDA-accelerated 3D deconvolution
magicgui
build GUIs from python types
npe2
napari plugin engine v2
napari-sphinx-theme
Bootstrap-based Sphinx theme from the napari community
napari-svg
A plugin for writing svg files with napari
ndv
simple nd image viewer
superqt
Missing widgets and components for PyQt/PySide
psygnal
Fast python callback/event system modeled after Qt Signals
in-n-out
plugable dependency injection and result processing
nd2
Yet another nd2 (Nikon NIS Elements) file reader
llspy
Lattice Light Sheet Processing Tools.
hatch-min-requirements
Hatchling plugin to create optional-dependencies pinned to minimum versions
fpbase
Stub for future FPbase API
pydantic-compat
Compatibility layer for pydantic v1/v2
pymmcore-midi
Midi control for microscopes using pymmcore
pyconify
iconify for python. Universal icon framework
dataclass-compat
Utilities for providing compatibility with many dataclass-like libraries
mrc
Read and write .mrc and .dv (deltavision) image file format
psfmodels
Scalar and vectorial models of the microscope point spread function (PSF).
fonticon-materialdesignicons6
Material Design Icons extension for superqt font icons
fonticon-materialdesignicons7
Material Design Icons 7 extension for superqt font icons
fonticon-fontawesome6
FontAwesome 6 extension for superqt font icons
napari-omero
napari/OMERO interoperability
napari-ndtiffs
napari plugin for nd tiff folders with OpenCl deskew
mgui
guis for declarative models
napari-error-reporter
Opt-in automated bug/error reporting for napari
bioformats-jar
bioformats_package.jar installer for scyjava
napari-spacemouse
3DConnexion SpaceMouse support for napari
napari-manual-transforms
Interface to manually edit layer affine transforms
napari-math
Simple mathematical operations on image, point and surface layers.
napari-dv
Deltavision/MRC file reader for napari
fonticon-fontawesome5
FontAwesome 5 extension for superqt font icons
resource-backed-dask-array
experimental Dask array that opens/closes a resource when computing
llspy-slm
Lattice Light Sheet SLM Pattern Generator
napari-plugin-engine
napari plugin engine, fork of pluggy
napari-bioformats
Bioformats for napari, using pims
QtRangeSlider
Multi-handle range slider widget for PyQt/PySide
napari-pims-bioformats
PIMS bioformats plugin for napari
tifffolder
Easily parse/access a subset of data from a <=6D folder of TIFFs
napari-s3zarr
load zarr stores from s3 into napari via dask
minimal-deploy
A minimal Python package
