47 projects
pipeline2app
Pipeline2App: a tool for quickly turning pipelines into containerised applications (e.g. BIDS Apps or XNAT pipelines)
pipeline2app-xnat
An extension of the pipeline2app to support making XNAT container service images
fileformats-medimage-mrtrix3-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
fileformats-medimage-mrtrix3
Classes for representing different file formats in Python classes for use in type hinting in data workflows
fileformats-datascience
Classes for representing datascience file formats in Python classes for use in type hinting in data workflows
frametree-xnat
An extension of FrameTree to support data stored in XNAT repository
xnat4tests
Creates basic XNAT instance for API tests
fileformats-extras
Extra methods for accessing and manipulating the underlying data referenced by fileformats classes
fileformats
Classes for representing different file formats in Python classes for use in type hinting in data workflows
frametree
Frametree: a framework for analysing datasets stored in trees of file objects "in-place"
medimages4tests
Generates dummy medical image data with realistic headers to be used in image handling tests
fileformats-medimage-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
fileformats-medimage
Classes for representing various medical imaging file formats in Python classes for use in type hinting in data workflows
pydra-mrtrix3
pydra-mrtrix3 contains Pydra task specifications for MRtrix3 tools
xnatutils
A collection of scripts for downloading/uploading and listing data from XNAT repositories.
frametree-bids
An FrameTree extension for interacting with Brain Imaging Structure (BIDS) datasets and associated "Apps"
pydra2app
Pydra2App: a tool for quickly turning Pydra tasks and workflows into containerised applications (e.g. BIDS Apps or XNAT pipelines)
pydra2app-xnat
An extension of the pydra2app to support making XNAT container service images
arcana
Abstraction of Repository-Centric ANAlysis (Arcana): A framework for analysing on file-based datasets "in-place" (i.e. without manual download)
xnat
An XNAT client that exposes the XNAT REST interface as python objects. Part of the interface is automatically generated based on the servers data model as defined by the xnat schema.
arcana-xnat
An extension of the Arcana framework to apply workflows and analyses on data stored within XNAT data repositories
arcana-bids
An Arcana extension for interacting with Brain Imaging Structure (BIDS) datasets and associated "Apps"
pydra-mriqc
Pydra tasks package for mriqc
pydra-niworkflows
Pydra tasks package for niworkflows
pydra-nireports
Pydra tasks package for nireports
nipype2pydra
Tool for converting Nipype tasks and workflows into Pydra syntax
pydra-afni
Pydra tasks package for afni
fileformats-medimage-afni-extras
Extensions to add functionality to tool-specific *fileformats* classes
fileformats-medimage-afni
Classes for representing different file formats in Python classes for use in type hinting in data workflows
pydra-fsl
Pydra tasks package for fsl
pydra-freesurfer
Pydra tasks package for freesurfer
pydra-ants
Pydra tasks package for ANTs
fileformats-medimage-fsl-extras
Extensions to add functionality to tool-specific *fileformats* classes
fileformats-medimage-fsl
Classes for representing different file formats in Python classes for use in type hinting in data workflows
pydra-fastsurfer
Pydra tasks package for fastsurfer
pydra-nipype1
Tools for importing nipype 1.x interfaces into Pydra
fileformats-mrtrix3-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
fileformats-datascience-extras
Classes for representing different file formats in Python classes for use in type hinting in data workflows
pydra-dcm2niix
Provides a task interface for the popular dcm2niix DICOM to NIfTI converter
fileformats-testing
Dummy classes for testing the 'fileformats' package
arcana-testing
Dummy classes for testing the Arcana framework
dds4xnat
Renames the scan type for MR sessions stored on XNAT using the DeepDicomSort algorithm
banana
Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)
nineml
A tool for reading, writing and generally working with 9ML objects and files.
ninemlcatalog
A collection of 9ML models and basic Python functions for accessing them
pype9
PYthon PipelinEs for 9ML (Pype9) is a collection of Python pipelines for simulating networks of neuron models described in 9ML with various simulator backends.
Diophantine
A python package for finding small solutions of systems of diophantine (integer algebra) equations
