12 projects
ttmask
CLI tool for mask creation in cryo-EM/ET
mdocfile
SerialEM mdoc files as pandas dataframes.
membrain-seg
membrane segmentation in 3D for cryo-ET
imodmodel
IMOD model files as pandas DataFrames in Python.
lil-aretomo
AreTomo (w)rapper for rln4
starfile
Read and write STAR files as pandas DataFrames
cryohub
IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
mmdf
macromolecular structures (.pdb/.mmCIF) as pandas dataframes
yet-another-imod-wrapper
A simple API for automated tilt-series alignment using IMOD
cryotypes
Generalized python types and validators for cryoEM data.
fidder
U-Net for 2D fiducial segmentation in cryo-EM
dynamotable
Read and write table files from the Dynamo software package for subtomogram averaging as pandas dataframes
