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Matthew McCormick

Username    thewtex
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139 projects

ngff-zarr

Last released

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

itkwasm

Last released

Python interface to itk-wasm WebAssembly (Wasm) modules.

multiscale_spatial_image

Last released

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can be serialized to OME-NGFF.

pygccxml

Last released

Python package for easy C++ declarations navigation.

itk-segmentation

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-registration

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-numerics

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-io

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-filtering

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-core

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk

Last released

ITK is an open-source toolkit for multidimensional image analysis

napari-itk-io

Last released

File IO with itk for napari

cmake

Last released

CMake is an open-source, cross-platform family of tools designed to build, test and package software

itkwasm-mesh-to-poly-data

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itkwasm-mesh-to-poly-data-emscripten

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itkwasm-mesh-to-poly-data-wasi

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itk-shape

Last released

A C++ implementation of Procrustes alignment for 3D meshes.

itkwasm-mesh-io

Last released

Input and output for scientific and medical image file formats.

itkwasm-mesh-io-emscripten

Last released

Input and output for scientific and medical image file formats.

itkwasm-mesh-io-wasi

Last released

Input and output for scientific and medical image file formats.

itkwasm-image-io

Last released

Input and output for scientific and medical image file formats.

itkwasm-image-io-emscripten

Last released

Input and output for scientific and medical image file formats.

itkwasm-image-io-wasi

Last released

Input and output for scientific and medical image file formats.

itkwasm-downsample

Last released

Pipelines for downsampling images.

itkwasm-downsample-emscripten

Last released

Pipelines for downsampling images.

itkwasm-downsample-wasi

Last released

Pipelines for downsampling images.

itkwasm-dicom

Last released

Read files and images related to DICOM file format.

itkwasm-dicom-emscripten

Last released

None

itkwasm-dicom-wasi

Last released

None

itkwasm-compare-meshes

Last released

Compare meshes and polydata for regression testing.

itkwasm-compare-meshes-emscripten

Last released

Compare meshes and polydata for regression testing.

itkwasm-compare-meshes-wasi

Last released

Compare meshes and polydata for regression testing.

itkwasm-compress-stringify

Last released

Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.

itkwasm-compress-stringify-emscripten

Last released

None

itkwasm-compress-stringify-wasi

Last released

None

itkwasm-compare-images

Last released

Compare images with a tolerance for regression testing.

itkwasm-compare-images-emscripten

Last released

None

itkwasm-compare-images-wasi

Last released

None

itk-nornir

Last released

Nornir's takes large sets of overlapping images in 2D and produces registered (a.k.a. aligned) 2D and 3D volumes of any size and scale.

itk-ants

Last released

Advanced Normalization Tools in WebAssembly

scikit-build-core

Last released

Build backend for CMake based projects

itk-iofdf

Last released

ITK `ImageIO` class to read or write the FDF image format

scikit-build

Last released

Improved build system generator for Python C/C++/Fortran/Cython extensions

lung-sarg

Last released

None

itk-elastix

Last released

Provides an ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

itkwasm-elastix

Last released

None

itkwasm-elastix-emscripten

Last released

None

itkwasm-elastix-wasi

Last released

None

itkwasm-htj2k

Last released

None

itkwasm-htj2k-emscripten

Last released

None

itkwasm-htj2k-wasi

Last released

None

itk-splitcomponents

Last released

ITK filters to split a multi-component pixel image into component-wise scalar images

itk-higherorderaccurategradient

Last released

itk-higherorderaccurategradient provides higher order

itk-parabolicmorphology

Last released

itk-parabolicmorphology provides mathematical morphological erosion and dilation filters using parabolic structuring functions.

itk-ioopenjph

Last released

An ITK module to read and write High-throughput JPEG2000 (HTJ2K) images.

itk-iomeshstl

Last released

MeshIO class to read and write ITK meshes into STL files.

itk-strain

Last released

ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation

itk-subdivisionquadedgemeshfilter

Last released

ITK classes for triangle mesh subdivision

itk-tubetk

Last released

An open-source toolkit, led by Kitware, Inc., for the segmentation, registration, and analysis of tubes (e.g., blood vessels) in images.

itk-texturefeatures

Last released

An ITK module to compute N-dimension grayscale texture feature images

itk-simpleitkfilters

Last released

This module contains a collension of ITK Filters used by SimpleITK. These filter are usefull to SimpleITK in that they may wrap existing ITK filters with an interface expected by SimpleITK, or may add important basic filters needed for completeness.

itk-minimalpathextraction

Last released

A minimal path extraction framework based on Fast Marching arrival functions.

itk-totalvariation

Last released

TotalVariation algorithms, providing a wrap for the external project: https://github.com/albarji/proxTV

itk-thickness3d

Last released

An ITK module to compute 3D thickness

itk-twoprojectionregistration

Last released

ITK classes for two-projection 2D/3D registration

itk-ringartifact

Last released

ITK filters to reduce stripe artifacts or ring artifacts common in X-ray computed tomography, focused ion beam images, etc.

itk-fastbilateral

Last released

Faster implementation of the itkBilateralImageFilter. From the insight journal submission: https://www.insight-journal.org/browse/publication/692

itkwidgets

Last released

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

itk-meshnoise

Last released

Classes to perturb mesh objects with Gaussian noise

itk-ioomezarrngff

Last released

IO for images stored in the OME-Zarr format.

itk-rleimage

Last released

ITKRLEImage provides run-length encoded storage for ITK images

itk-phasesymmetry

Last released

itk-phasesymmetry provides multi-scale steerable filters

spatial-image

Last released

spatial-image

itk-fpfh

Last released

The feature points could be used obtain salient points while performing registration using RANSAC remote module. The class PointFeature is the main driver that takes a PointSet as argument. Please refer to the documentation for a detailed description and sample usage: https://github.com/InsightSoftwareConsortium/ITKFPFH

itk-ransac

Last released

It supports feature based registration and can be used along with the FPFH remote module. The class itkRANSAC is the main driver that takes an object of class itkLandmarkRegistrationEstimator as argument. Please refer to the documentation for a detailed description and sample usage: https://github.com/InsightSoftwareConsortium/ITKRANSAC.

itk-cuberille

Last released

Cuberille implicit surface polygonization to generate meshes from images.

itkwasm-sub-mesh

Last released

Extract a subset of a mesh given by the cell identifiers.

itkwasm-sub-mesh-wasi

Last released

Extract a subset of a mesh given by the cell identifiers.

itk-webassemblyinterface

Last released

IO with the itk-wasm file formats

itk-meshtopolydata

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itk-montage

Last released

Montaging for microscopy imaging files.

itkwasm-morphological-contour-interpolation

Last released

Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.

itkwasm-morphological-contour-interpolation-emscripten

Last released

Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.

itkwasm-morphological-contour-interpolation-wasi

Last released

Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.

compare-meshes

Last released

Compare meshes and polydata for regression testing.

compare-meshes-emscripten

Last released

Compare meshes and polydata for regression testing.

compare-meshes-wasi

Last released

Compare meshes and polydata for regression testing.

itk-viewer-agave-renderer

Last released

None

itkwasm-downsample-cucim

Last released

Pipelines for downsampling images. cuCIM implementation.

itk-growcut

Last released

Segments a 3D image from foreground and background seeds.

itk-dreg

Last released

ITK-DREG Distributed registration framework.

itk-genericlabelinterpolator

Last released

ITK classes for generic interpolation of label images.

pytest-web3-data

Last released

A pytest plugin to fetch test data from IPFS HTTP gateways during pytest execution.

itk-viewer-remote-image

Last released

None

oai-analysis

Last released

Image analysis for the Osteoarthritis Initiative (OAI) knee magnetic resonance image (MRI) dataset.

itk-isotropicwavelets

Last released

Steerable Wavelet Pyramid with Isotropic Wavelets and Riesz Functions

itk-ultrasound

Last released

Filters for use with the Insight Toolkit (ITK) that may be particularly useful for the reconstruction and analysis of ultrasound images.

itk-cleaver

Last released

An ITK interface to the Cleaver multi-material tetrahedral meshing library

itk-labelerodedilate

Last released

An ITK module for erode and dilate operations on label images

itk-iomeshswc

Last released

ITK module for reading meshes from SWC files, a format for representing neuron morphology.

itk-bonemorphometry

Last released

An ITK module to compute bone morphometry features and feature maps

itk-morphologicalcontourinterpolation

Last released

Image morphological contour interpolation.

itk-pocus

Last released

ITKPOCUS - an open source library for image processing and AI of point-of-care ultrasound, based on ITK (https://pypi-hypernode.com/project/itk/)

itk-vkfft

Last released

VkFFT backends for ITK FFT classes.

itk-ioscanco

Last released

An ITK module to read and write Scanco microCT .isq files.

itk-bsplinegradient

Last released

Approximate an image's gradient from a B-spline fit to its intensity.

vtk-addon

Last released

General-purpose features that may be integrated into VTK library in the future.

itk-clesperanto

Last released

ITK filters accelerated with OpenCL.

shardedstore

Last released

Provides a sharded Zarr store.

spatial_image_multiscale

Last released

spatial-image-multiscale

tensorboard-plugin-3d

Last released

TensorBoard plugin for 3D visualization

spatial_image_ngff

Last released

spatial-image-ngff

itk_cucim

Last released

ITK Python filters accelerated with cuCIM.

itk-thinshelldemons

Last released

Thin Shell Demons for Surface to Surface Registration

itk-iomgh

Last released

An ITK module to support input and output of the MGH file format.

itk-boneenhancement

Last released

Various filters for enhancing cortical bones in quantitative computed tomography.

itk-elastix-opencl

Last released

Provides an ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

itk-anisotropicdiffusionlbr

Last released

Smooth images while preserving edges or coherent structures.

itk-hasi

Last released

High-throughput Applications for Skeletal Imaging

hasi

Last released

High-throughput Applications for Skeletal Imaging (HASI) Python content

itk-skullstripping

Last released

Automatic skull-stripping for neuroimage analysis

itk_napari_conversion

Last released

Convert between itk and napari data structures.

itk-ndreg

Last released

This is the Neurodata open-source Python package that performs affine and deformable (LDDMM) image registration.

simtk

Last released

sim: structured illumination microscopy

itk-smoothingrecursiveyvvgaussianfilter

Last released

Young & Van Vliet recursive Gaussian smoothing filter for GPU (OpenCL) and CPU

itk-polartransform

Last released

This module contains ITK classes to transform from cartesian to polar coordinate systems and back.

itk-principalcomponentsanalysis

Last released

ITK classes for the analysis of the principal components of data sets, optionally point data associated with the vertices of a mesh.

itk-fixedpointinversedisplacementfield

Last released

Takes a displacement field as input and computes the displacement field that is its inverse.

ccfwidget

Last released

A Jupyter widget for the Allen Common Coordinate Framework (CCF) Mouse Brain Atlas.

itk-gpusmoothing

Last released

Common smoothing filters accelerated with OpenCL.

itk-gpuimagefilterbase

Last released

Base classes for ITK image filters accelerated with OpenCL.

itk-gpufinitedifference

Last released

Base classes for ITK finite difference filters accelerated with OpenCL.

itk-gpucommon

Last released

Core classes for ITK filters accelerated with OpenCL.

itk-vtkglue

Last released

This module contains classes that bridge and ITK and VTK image processing and visualization pipeline.

scikit-ci

Last released

scikit-ci enables a centralized and simpler CI configuration for Python extensions.

scikit-ci-addons

Last released

scikit-ci-addons is a command line tool and a set of scripts useful to help drive the CI of projects leveraging services like Appveyor, CircleCI, or TravisCI.

jinja2-github

Last released

Jinja2 Extension for rendering GitHub project properties

itk-krcahsheetness

Last released

ITK filters to generate a sheetness feature image useful for segmenting bone in CT images and similar applications.

sphinx-foundation-theme

Last released

A Sphinx HTML theme that uses Zurb foundation-sites.

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