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Lukas Heumos

Username    zethson
Date joined   Joined

21 projects

ourprojects

Last released

Manage projects & teams.

omop

Last released

OMOP Common Data Model [`source <https://github.com/laminlabs/omop/blob/main/omop/models.py>`__].

bionty

Last released

Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].

cellxgene_lamin

Last released

Manage cellxgene metadata using LaminDB.

scirpy

Last released

Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis

pertpy

Last released

Perturbation Analysis in the scverse ecosystem.

ehrapy

Last released

Electronic Health Record Analysis with Python.

lnschema_bionty

Last released

Registries for basic biological entities, coupled to public ontologies.

bionty-base

Last released

Bionty.

infercnvpy

Last released

Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable.

fknni

Last released

Fast implementations of KNN imputation.

sparsecca

Last released

A full implementation of sparse CCA.

sc-toolbox

Last released

A collection of project templates and useful code snippets for single-cell data analysis with Scanpy.

cookietemple

Last released

A cookiecutter based project template creation tool supporting several domains and languages with advanced linting, syncing and standardized workflows to get your project kickstarted in no time.

pypi-latest

Last released

Verify that currently installed version is the latest one released on PyPI and update it if not.

mlf-core

Last released

Reproducible machine learning pipelines using mlflow.

lcep-package

Last released

Python package for lcep.

system-intelligence

Last released

Query your system for all hardware and software related information.

qube

Last released

QBiC's internal project template collection.

SEIR

Last released

SEIR modelling of covid19

promoe

Last released

Protonize a selection of atoms of protein binding sites.

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