Perturbation Analysis in the scverse ecosystem.

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  • License: Apache Software License (MIT License Copyright (c) 2021, Lukas Heumos Permission is hereby granted, free of charge, to any ...)
  • Author: Lukas Heumos, Yuge Ji, Lilly May, Alejandro Tejada, Johannes Köster, Emma Dann, Xinyue Zhang, Xichen Wu, Tessa Green, Stefan Peidli, Antonia Schumacher, Gregor Sturm
  • Maintainer: Lukas Heumos
  • Requires: Python >=3.10
  • Provides-Extra: coda, de, dev, doc, test
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Black Build codecov License PyPI Python Version Read the Docs Test PyPI

pertpy

fig1

Documentation

Please read the documentation.

Installation

We recommend installing and running pertpy on a recent version of Linux (e.g. Ubuntu 24.04 LTS). No particular hardware beyond a standard laptop is required.

You can install pertpy in less than a minute via pip from PyPI:

pip install pertpy

if you want to use scCODA or tascCODA, please install pertpy as follows:

pip install pertpy[coda]

If you want to use the differential gene expression interface, please install pertpy by running:

pip install pertpy[de]

Citation

Lukas Heumos, Yuge Ji, Lilly May, Tessa Green, Xinyue Zhang, Xichen Wu, Johannes Ostner, Stefan Peidli, Antonia Schumacher, Karin Hrovatin, Michaela Mueller, Faye Chong, Gregor Sturm, Alejandro Tejada, Emma Dann, Mingze Dong, Mojtaba Bahrami, Ilan Gold, Sergei Rybakov, Altana Namsaraeva, Amir Ali Moinfar, Zihe Zheng, Eljas Roellin, Isra Mekki, Chris Sander, Mohammad Lotfollahi, Herbert B. Schiller, Fabian J. Theis bioRxiv 2024.08.04.606516; doi: https://doi.org/10.1101/2024.08.04.606516

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for grst from gravatar.com grst Avatar for zethson from gravatar.com zethson

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: Apache Software License (MIT License Copyright (c) 2021, Lukas Heumos Permission is hereby granted, free of charge, to any ...)
  • Author: Lukas Heumos, Yuge Ji, Lilly May, Alejandro Tejada, Johannes Köster, Emma Dann, Xinyue Zhang, Xichen Wu, Tessa Green, Stefan Peidli, Antonia Schumacher, Gregor Sturm
  • Maintainer: Lukas Heumos
  • Requires: Python >=3.10
  • Provides-Extra: coda, de, dev, doc, test
Classifiers

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0.9.4

0.9.3

This version

0.9.1

0.8.0

0.7.0

0.6.0

0.5.0

0.4.0

0.3.0

0.2.0

0.1.0

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