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Parse fcs files into AnnData.

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readfcs: Read FCS files

Lightweight Python library to load data and metadata from Flow Cytometry Standard (FCS) files into DataFrame and AnnData objects.


Install: pyversions

$ pip install readfcs

Get started:

import readfcs

readfcs.read()  # Read FCS files into `AnnData`

readfcs.ReadFCS()  # Debug possible integrity issues in your FCS files

Read the docs or read the blog post.

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